Survival-associated meQTLs across different cancer types


We identified 23,432 meQTLs associated with patient overall survival across different cancer types at FDR < 0.05.


e.g., "BLCA"
e.g., "rs11600543"


Cancer type
SNP ID
SNP position (hg19)
Alleles (A/a)
log-rank test p-value
Sample size
Median survival time AA
Median survival time Aa
Median survival time aa
Dispaly
LIHC rs76492512 chr5:147049693 T/G 4.13E-7 366 20.05 16.2 4.67 KM Plot
LIHC rs7653216 chr3:7912970 G/C 1.88E-7 368 19.17 23.18 3.03 KM Plot
LIHC rs76580404 chr11:107191013 T/C 1.32E-5 361 19.8 19.17 1.87 KM Plot
LIHC rs76652166 chr14:73456166 G/T 5.2E-6 367 20.5 13.17 8.73 KM Plot
LIHC rs76668473 chr5:145572221 T/TAAAAC 4.59E-5 359 19.7 20.97 13.73 KM Plot
LIHC rs76671977 chr14:73468879 T/C 1.84E-6 367 20.38 13.17 4.93 KM Plot
LIHC rs76673185 chr6:169973675 G/C 1.4E-5 364 19.7 18.97 4.27 KM Plot
LIHC rs76694914 chr2:37099511 C/T 1.32E-5 365 20.4 12.17 8.73 KM Plot
LIHC rs76734158 chr11:107204517 A/G 1.36E-5 360 19.83 19.17 1.87 KM Plot
LIHC rs76908557 chr16:10136291 C/T 9.21E-6 366 19.23 25.5 1.87 KM Plot
LIHC rs77000120 chr2:37094391 T/C 1.66E-5 368 20.45 12.17 8.73 KM Plot
LIHC rs77008583 chr5:147016842 A/C 1.71E-5 367 20.05 16.2 4.25 KM Plot
LIHC rs77043623 chr5:147039756 A/C 1.84E-5 365 20.05 16.2 4.25 KM Plot
LIHC rs77104387 chr2:37057207 C/A 1.84E-5 364 20.45 12.17 8.73 KM Plot
LIHC rs77108208 chr2:37187794 G/A 9.31E-6 367 20.45 12.17 8.73 KM Plot